Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103410: Whole Exome sequencing for the 1000 Genomes Project
8 ILLUMINA (Illumina HiSeq 2000) runs: 22.7M spots, 3.6G bases, 2.4Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG01868

Library:

Name: Catch-88547

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_954	TTCGCTGA

85 reverse

BI GSSR sample ID: 120491.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MRP 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-12 08:37:04.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 22.7M spots, 3.6G bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR359816	2,515,264	402.4M	272.6Mb	2011-10-31
SRR359824	2,902,925	464.5M	317.2Mb	2011-10-31
SRR359835	2,865,039	458.4M	312Mb	2011-10-31
SRR360207	2,885,512	461.7M	313.5Mb	2011-11-01
SRR360213	2,813,836	450.2M	304.8Mb	2011-11-01
SRR360221	2,842,671	454.8M	306.9Mb	2011-11-01
SRR360228	2,944,090	471.1M	319.4Mb	2011-11-01
SRR363078	2,900,095	464M	314.8Mb	2011-11-07

Supplemental Content

Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
gi|2288963963|gb|UVH37839.1|

Protein
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
gi|15011896|ref|NM_022242.2|

Nucleotide
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
gi|5639998|gb|AF162704.1|

Nucleotide
Biopsy, Large-Core Needle
Biopsy, Large-Core Needle
The use of needles usually larger than 14-gauge to remove tissue samples large enough to retain cellular architecture for pathology examination.<br/>Year introduced: 2013

MeSH

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SRA